parallel_blockstructured Class Reference

Detailed Description

Definition at line 387 of file Grid.H.

#include <Grid.H>

Public Types
typedef halo	HaloType

Public Member Functions
int	SetupThreads (std::vector< int > &numThreadPartitions)
	parallel_blockstructured ()
int	NumberOfThreads () const
void	SetNumThreads (int numThreads)
std::vector< pcpp::IndexIntervalType > &	ThreadPartitionIntervals ()
const std::vector< pcpp::IndexIntervalType > &	ThreadPartitionIntervals () const
std::vector< pcpp::IndexIntervalType > &	ThreadPartitionBufferIntervals ()
const std::vector< pcpp::IndexIntervalType > &	ThreadPartitionBufferIntervals () const
std::vector< pcpp::IndexIntervalType > &	ThreadBufferIntervals ()
const std::vector< pcpp::IndexIntervalType > &	ThreadBufferIntervals () const
int	Dimension () const
size_t	BufferSize () const
size_t	PartitionSize () const
pbsintervals &	Intervals ()
const pbsintervals &	Intervals () const
void	SetDecompSizes (const std::vector< int > &inDecomp)
const std::vector< int > &	DecompSizes () const
std::vector< int > &	DecompSizes ()
void	SetGridSizes (const std::vector< size_t > &inSize)
const std::vector< size_t > &	BufferSizes () const
std::vector< size_t > &	BufferSizes ()
const std::vector< size_t > &	GridSizes () const
std::vector< size_t > &	GridSizes ()
void	SetPartitionSizes (const std::vector< size_t > &inPartSize)
const std::vector< size_t > &	PartitionSizes () const
void	SetDimensionExtensions (const std::vector< size_t > &inExtensions)
void	SetPartitionInterval (const pcpp::IndexIntervalType &inInterval)
pcpp::IndexIntervalType &	PartitionInterval ()
const pcpp::IndexIntervalType &	PartitionInterval () const
std::vector< double > &	CoordinateData ()
const std::vector< double > &	CoordinateData () const
const double *	CoordinateData (int inDim) const
double *	CoordinateData (int inDim)
int	ExchangeCoordinates ()
pcpp::IndexIntervalType &	PartitionBufferInterval ()
const pcpp::IndexIntervalType &	PartitionBufferInterval () const
int	Finalize (bool allocateCoordinateData=false)
void	AllocateCoordinateData ()
const std::vector< double > &	PhysicalExtent () const
std::vector< double > &	PhysicalExtent ()
void	SetPhysicalExtent (const std::vector< double > &inExtent)
const std::vector< double > &	DX () const
std::vector< double > &	DX ()
void	SetGridSpacings (const std::vector< double > &inSpacing)
void	SetHalo (halo &inHalo)
HaloType &	Halo ()
int	GenerateCoordinates (std::ostream &)
int	GenerateCoordinates (int(*)(const std::vector< size_t > &, std::vector< double > &), std::ostream &)
int	GenerateGrid (int(*)(const std::vector< int > &, const std::vector< double > &, const std::vector< size_t > &, const std::vector< size_t > &, std::vector< double > &), std::ostream &)
const std::vector< subregion > &	SubRegions () const
std::vector< subregion > &	SubRegions ()
int	GetRegionIndex (const std::string &regionName) const
std::vector< bool > &	PeriodicDirs ()
const std::vector< bool > &	PeriodicDirs () const
std::vector< int > &	DecompDirs ()
const std::vector< int > &	DecompDirs () const
void	SetDecompDirs (const std::vector< int > &inDecomp)
void	SetPeriodicDirs (const std::vector< bool > &inPeriodic)
void	SetPeriodicLengths (const std::vector< double > &inLengths)
std::vector< int > &	ThreadDecompDirs ()
const std::vector< int > &	ThreadDecompDirs () const
void	SetThreadDecompDirs (const std::vector< int > &inThread)
void	SetType (int inType)
int	Type () const
void	SetScaleFactor (const std::vector< double > &inScale)
int	ParallelSetup (fixtures::CommunicatorType &inComm, pcpp::ParallelTopologyInfoType &cartInfo, int haloDepth, std::ostream &messageStream)
	Perform cartesian communicator initialization for a grid. More...
std::vector< int > &	FlagData ()
const std::vector< int > &	FlagData () const
void	DestroyFlags ()
size_t	FlagMask (int *iMask, int flagValue=0, int flagBit=1) const
std::vector< double > &	Metric ()
std::vector< double >	Metric () const
std::vector< double > &	Jacobian ()
std::vector< double >	Jacobian () const
std::vector< double > &	JacobianMatrix ()
std::vector< double >	JacobianMatrix () const
int	ComputeUniformRectangularMetrics (std::ostream &messageStream)
int	ComputeRectilinearMetrics (std::ostream &messageStream)
int	ComputeCurvilinearMetrics2D (std::ostream &messageStream)
int	ComputeCurvilinearMetrics3D (std::ostream &messageStream)
int	CurvilinearMetrics (std::ostream &messageStream)
int	ComputeMetrics (std::ostream &messageStream)
int	ComputeMetricIdentities (std::vector< double > &identityData, std::ostream &messageStream)
int	SetupDifferentialOperator (plascom2::operators::stencilset *inStencilSet, int *inStencilConnectivity)
int	ExchangeNodalData (int numComponents, double *dataBuffer)
int	ExchangeJacobianMatrix (std::ostream &messageStream)
int	GradIJK (int numComponents, double *sourceBuffer, double *targetBuffer, std::ostream &messageStream, bool exchange)
int	ComputeJacobianMatrix (std::ostream &messageStream)
	Calculates the regular/naive Jacobian matrix d(xyz)/d(ijk) More...
int	ComputeJacobianMatrix2 (std::ostream &messageStream)
	Calculates the gradient of the regular/naive J^-1 d^2(xyz)/d(ijk)^2. More...
std::vector< double > &	GridGenerationParameters ()
const std::vector< double > &	GridGenerationParameters () const
void	SetGridGenerationParameters (const std::vector< double > &inParams)
std::vector< int > &	GridGenerationOptions ()
const std::vector< int > &	GridGenerationOptions () const
void	SetGridGenerationOptions (const std::vector< int > &inOptions)
Public Member Functions inherited from parallel_base
virtual int	ConfigureGrid (fixtures::ConfigurationType &inConfig, std::ostream &messageStream)
virtual int	Configure (fixtures::ConfigurationType &inConfig)
virtual std::string	ReportConfiguration ()
fixtures::CommunicatorType &	Communicator () const
size_t	NumGlobalPoints ()
size_t	NumLocalPoints ()
Public Member Functions inherited from base
int	NumDim () const
size_t	NumPoints () const
int	Dimension () const

Protected Attributes
int	gridType
	GridType. More...
size_t	numPointsBuffer
	Number of points in the buffer. More...
size_t	numPointsPartition
	Number of points in the partition. More...
pbsintervals	partitionIntervals
	The relevant partition intervals. More...
std::vector< size_t >	dimExtensions
	Number of "halo/ghost" points in each (+/-) of the 2*numDim directions. More...
pcpp::IndexIntervalType	globalBufferInterval
	The local buffer interval wrt the global grid size [yet unused]. More...
std::vector< double >	gridCoordinates
	The coordinate buffer. More...
TopoType	gridTopoType
	The topology type. More...
std::vector< double >	gridMetric
	Grid metrics (sizes depend on gridTopoType) More...
std::vector< double >	gridJacobian
std::vector< double >	jacobianMatrix
std::vector< double >	jacobianMatrix2
std::vector< double >	gridGenParams
std::vector< int >	gridGenOptions
std::vector< int >	flagData
std::vector< double >	physicalExtent
	Physical grid extent (when applicable) More...
std::vector< double >	dX
	Grid spacing data structure (size depends on gridTopoType) More...
std::vector< double >	scaleFactor
	Grid scaling factor. More...
plascom2::operators::stencilset *	stencilSet
	Differential operator. More...
int *	stencilConnectivity
halo	gridHalo
	Halo object for communicating data with grid "neighbors". More...
halo *	haloPtr
std::vector< bool >	periodicDirs
std::vector< double >	periodicLengths
std::vector< int >	decompDirs
std::vector< int >	threadDecompDirs
int	xyzMessageId
int	metricMessageId
std::vector< subregion >	subRegions
	Sub-regions and boundaries. More...
int	errorState
Protected Attributes inherited from parallel_base
fixtures::CommunicatorType	gridCommunicator
size_t	numGlobalPoints
size_t	numLocalPoints
Protected Attributes inherited from base
fixtures::ConfigurationType	gridConfig
size_t	numPoints
int	numDim

Inheritance diagram for parallel_blockstructured:

Collaboration diagram for parallel_blockstructured:

Member Typedef Documentation

HaloType

typedef halo HaloType

Definition at line 392 of file Grid.H.

Constructor & Destructor Documentation

parallel_blockstructured()

parallel_blockstructured ( )

inline

Definition at line 398 of file Grid.H.

Member Function Documentation

AllocateCoordinateData()

void AllocateCoordinateData ( )

inline

Definition at line 524 of file Grid.H.

References numPointsBuffer.

Referenced by parallel_blockstructured::Finalize(), parallel_blockstructured::GenerateCoordinates(), parallel_blockstructured::GenerateGrid(), TestHDF5PBSGridIO(), and TestHDF5Read2DBlockStructuredGrid().

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BufferSize()

size_t BufferSize ( ) const

inline

Definition at line 430 of file Grid.H.

References numPointsBuffer.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics2D(), parallel_blockstructured::ComputeCurvilinearMetrics3D(), parallel_blockstructured::ComputeJacobianMatrix(), parallel_blockstructured::ComputeJacobianMatrix2(), parallel_blockstructured::ComputeMetricIdentities(), parallel_blockstructured::ComputeRectilinearMetrics(), parallel_blockstructured::ComputeUniformRectangularMetrics(), parallel_blockstructured::CurvilinearMetrics(), parallel_blockstructured::ExchangeCoordinates(), parallel_blockstructured::ExchangeJacobianMatrix(), testfixtures::viscid::GeneratePoiseuilleExact(), testfixtures::viscid::GenerateViscidShockExact(), parallel_blockstructured::GradIJK(), TestEulerRHS(), TestEulerRHS2(), TestGrid_CurvilinearMetric(), TestGrid_CurvilinearVGWavy(), TestGrid_PBS_IntegratedHalo(), TestGrid_RectilinearMetric(), TestHDF5PBSGridIO(), TestIntegrated_PFCurvilinear2DX(), TestIntegrated_PFCurvilinear2DY(), TestIntegrated_PFCurvilinear3DZ(), TestIntegrated_PFRectilinear2DX(), TestIntegrated_PFRectilinear2DY(), TestIntegrated_PFRectilinear3DZ(), TestIntegrated_Poiseuille2DX(), TestIntegrated_Poiseuille2DY(), TestIntegrated_Poiseuille3DZ(), TestIntegrated_ViscousShock2DX(), TestIntegrated_ViscousShock2DY(), TestIntegrated_ViscousShock3DZ(), TestIntegrated_VSCurvilinear2DX(), TestIntegrated_VSCurvilinear2DY(), TestIntegrated_VSCurvilinear3DZ(), TestIntegrated_VSRectilinear2DX(), TestIntegrated_VSRectilinear2DY(), TestIntegrated_VSRectilinear3DZ(), TestMaxwellRHS(), TestMaxwellRHSTimeIntegrate(), TestPlasCom2Output(), TestVelocityGradient(), TestVelocityGradientPeriodic(), TestViscidRHS(), TestWENO_ApplyWENO(), and TestWENO_RHS().

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BufferSizes() [1/2]

const std::vector<size_t>& BufferSizes ( ) const

inline

Definition at line 459 of file Grid.H.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics2D(), parallel_blockstructured::ComputeCurvilinearMetrics3D(), parallel_blockstructured::ComputeJacobianMatrix(), parallel_blockstructured::ComputeMetricIdentities(), parallel_blockstructured::ComputeMetrics(), parallel_blockstructured::ComputeRectilinearMetrics(), parallel_blockstructured::ComputeUniformRectangularMetrics(), parallel_blockstructured::CurvilinearMetrics(), parallel_blockstructured::ExchangeCoordinates(), parallel_blockstructured::FlagMask(), parallel_blockstructured::GenerateCoordinates(), parallel_blockstructured::GenerateGrid(), testfixtures::viscid::GeneratePoiseuilleExact(), testfixtures::viscid::GenerateViscidShockExact(), parallel_blockstructured::GradIJK(), parallel_blockstructured::ParallelSetup(), plascom2::io::hdf5::ReadSingle(), plascom2::io::hdf5::ReadSingleState(), application::RunPlasCom2(), parallel_blockstructured::SetupThreads(), TestGrid_CurvilinearMetric(), TestGrid_CurvilinearVGWavy(), TestGrid_PBS_IntegratedHalo(), TestGrid_RectilinearMetric(), TestHDF5PBSGridIO(), TestMaxwellRHSTimeIntegrate(), TestPlasCom2Output(), TestVelocityGradient(), TestVelocityGradientPeriodic(), TestWENO_ApplyWENO(), and TestWENO_RHS().

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BufferSizes() [2/2]

std::vector<size_t>& BufferSizes ( )

inline

Definition at line 464 of file Grid.H.

ComputeCurvilinearMetrics2D()

int ComputeCurvilinearMetrics2D

(

std::ostream &

messageStream

)

Definition at line 569 of file Grid.C.

References operators::applyoperator(), parallel_blockstructured::BufferSize(), bufferSizes, parallel_blockstructured::BufferSizes(), parallel_blockstructured::CoordinateData(), FC_MODULE(), sizeextent::Flatten(), parallel_blockstructured::gridCoordinates, parallel_blockstructured::gridJacobian, parallel_blockstructured::gridMetric, gridSizes, parallel_blockstructured::GridSizes(), sizeextent::NNodes(), base::numDim, pbsintervals::numDim, parallel_blockstructured::numPointsBuffer, numStencils, stencilset::numStencils, stencilset::numValues, parallel_blockstructured::PartitionBufferInterval(), parallel_blockstructured::PartitionInterval(), parallel_blockstructured::partitionIntervals, parallel_blockstructured::stencilConnectivity, stencilOffsets, stencilset::stencilOffsets, parallel_blockstructured::stencilSet, stencilSizes, stencilset::stencilSizes, stencilStarts, stencilset::stencilStarts, stencilWeights, stencilset::stencilWeights, operators::xax(), operators::yaxm1(), yaxpy(), and operators::zxy().

Referenced by parallel_blockstructured::ComputeMetrics().

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ComputeCurvilinearMetrics3D()

int ComputeCurvilinearMetrics3D

(

std::ostream &

messageStream

)

5 7 1 4 6 2 3 // met[0] = y_eta_zeta*z + y_eta*z_zeta - y_zeta_eta*z - y_zeta*z_eta;

Definition at line 966 of file Grid.C.

References parallel_blockstructured::BufferSize(), bufferSizes, parallel_blockstructured::BufferSizes(), parallel_blockstructured::ComputeJacobianMatrix(), parallel_blockstructured::ComputeJacobianMatrix2(), operators::determinant3x3(), parallel_blockstructured::ExchangeJacobianMatrix(), FC_MODULE(), sizeextent::Flatten(), parallel_blockstructured::gridCoordinates, parallel_blockstructured::gridJacobian, parallel_blockstructured::gridMetric, gridSizes, parallel_blockstructured::GridSizes(), parallel_blockstructured::jacobianMatrix, parallel_blockstructured::jacobianMatrix2, operators::metricsum4(), sizeextent::NNodes(), base::numDim, parallel_blockstructured::numPointsBuffer, parallel_blockstructured::PartitionBufferInterval(), parallel_blockstructured::PartitionInterval(), and operators::yaxm1().

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ComputeJacobianMatrix()

int ComputeJacobianMatrix

(

std::ostream &

messageStream

)

Calculates the regular/naive Jacobian matrix d(xyz)/d(ijk)

This routine computes the Jacobian matrix d(xyz)/d(ijk) and stuffs it into a native datastructure. It is used in full grid metrics

Definition at line 916 of file Grid.C.

References parallel_blockstructured::BufferSize(), bufferSizes, parallel_blockstructured::BufferSizes(), parallel_blockstructured::CoordinateData(), parallel_blockstructured::GradIJK(), parallel_blockstructured::gridCoordinates, gridSizes, parallel_blockstructured::GridSizes(), parallel_blockstructured::jacobianMatrix, base::numDim, pbsintervals::numDim, parallel_blockstructured::numPointsBuffer, parallel_blockstructured::PartitionBufferInterval(), parallel_blockstructured::PartitionInterval(), and parallel_blockstructured::partitionIntervals.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics3D(), parallel_blockstructured::CurvilinearMetrics(), TestGrid_CurvilinearMetric(), and TestGrid_CurvilinearVGWavy().

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ComputeJacobianMatrix2()

int ComputeJacobianMatrix2

(

std::ostream &

messageStream

)

Calculates the gradient of the regular/naive J^-1 d^2(xyz)/d(ijk)^2.

This routine computes the Jacobian matrix d^2(xyz)/d(ijk)^2 and stuffs it into a native datastructure (jacobianMatrix2). It is used in full grid metrics

Definition at line 946 of file Grid.C.

References parallel_blockstructured::BufferSize(), parallel_blockstructured::GradIJK(), parallel_blockstructured::jacobianMatrix, parallel_blockstructured::jacobianMatrix2, numComponents, base::numDim, pbsintervals::numDim, parallel_blockstructured::numPointsBuffer, and parallel_blockstructured::partitionIntervals.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics3D().

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ComputeMetricIdentities()

int ComputeMetricIdentities	(	std::vector< double > &	identityData,
		std::ostream &	messageStream
	)

Definition at line 737 of file Grid.C.

References a, operators::applyoperator(), parallel_blockstructured::BufferSize(), bufferSizes, parallel_blockstructured::BufferSizes(), simulation::grid::CURVILINEAR, parallel_blockstructured::Dimension(), parallel_blockstructured::ExchangeNodalData(), FC_MODULE(), sizeextent::Flatten(), parallel_blockstructured::gridMetric, gridSizes, parallel_blockstructured::GridSizes(), parallel_blockstructured::gridType, base::numDim, parallel_blockstructured::numPointsBuffer, numStencils, stencilset::numStencils, stencilset::numValues, parallel_blockstructured::PartitionBufferInterval(), parallel_blockstructured::PartitionInterval(), parallel_blockstructured::stencilConnectivity, stencilOffsets, stencilset::stencilOffsets, parallel_blockstructured::stencilSet, stencilSizes, stencilset::stencilSizes, stencilStarts, stencilset::stencilStarts, stencilWeights, stencilset::stencilWeights, and yaxpy().

Referenced by TestGrid_CurvilinearMetric(), and TestGrid_CurvilinearVGWavy().

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ComputeMetrics()

int ComputeMetrics

(

std::ostream &

messageStream

)

Definition at line 519 of file Grid.C.

References bufferSizes, parallel_blockstructured::BufferSizes(), simulation::grid::CARTESIAN, parallel_blockstructured::ComputeCurvilinearMetrics2D(), parallel_blockstructured::ComputeRectilinearMetrics(), parallel_blockstructured::ComputeUniformRectangularMetrics(), parallel_blockstructured::CurvilinearMetrics(), gridSizes, parallel_blockstructured::GridSizes(), parallel_blockstructured::gridType, sizeextent::NNodes(), base::numDim, parallel_blockstructured::PartitionBufferInterval(), parallel_blockstructured::PartitionInterval(), simulation::grid::RECTILINEAR, parallel_blockstructured::stencilConnectivity, parallel_blockstructured::stencilSet, and simulation::grid::UNIRECT.

Referenced by TestGrid_CartesianMetric(), TestGrid_CurvilinearMetric(), TestGrid_CurvilinearVGWavy(), and TestGrid_RectilinearMetric().

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ComputeRectilinearMetrics()

int ComputeRectilinearMetrics

(

std::ostream &

messageStream

)

Definition at line 328 of file Grid.C.

References operators::applyoperator(), parallel_blockstructured::BufferSize(), bufferSizes, parallel_blockstructured::BufferSizes(), FC_MODULE(), sizeextent::Flatten(), parallel_blockstructured::gridCoordinates, parallel_blockstructured::gridJacobian, parallel_blockstructured::gridMetric, gridSizes, parallel_blockstructured::GridSizes(), base::numDim, parallel_blockstructured::numPointsBuffer, numStencils, stencilset::numStencils, stencilset::numValues, parallel_blockstructured::PartitionBufferInterval(), parallel_blockstructured::PartitionInterval(), parallel_blockstructured::stencilConnectivity, stencilOffsets, stencilset::stencilOffsets, parallel_blockstructured::stencilSet, stencilSizes, stencilset::stencilSizes, stencilStarts, stencilset::stencilStarts, stencilWeights, stencilset::stencilWeights, operators::yaxm1(), operators::yxy(), and operators::zxy().

Referenced by parallel_blockstructured::ComputeMetrics().

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ComputeUniformRectangularMetrics()

int ComputeUniformRectangularMetrics

(

std::ostream &

messageStream

)

Definition at line 252 of file Grid.C.

References bufferInterval, parallel_blockstructured::BufferSize(), bufferSizes, parallel_blockstructured::BufferSizes(), parallel_blockstructured::CoordinateData(), parallel_blockstructured::Dimension(), apptools::DumpContents(), parallel_blockstructured::dX, sizeextent::GetFlatIndices(), parallel_blockstructured::gridCoordinates, parallel_blockstructured::gridJacobian, parallel_blockstructured::gridMetric, gridSizes, parallel_blockstructured::GridSizes(), sizeextent::InitSimple(), base::numDim, parallel_blockstructured::numPointsBuffer, parallel_blockstructured::PartitionBufferInterval(), and parallel_blockstructured::PartitionInterval().

Referenced by parallel_blockstructured::ComputeMetrics().

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CoordinateData() [1/4]

std::vector<double>& CoordinateData ( )

inline

Definition at line 503 of file Grid.H.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics2D(), parallel_blockstructured::ComputeJacobianMatrix(), parallel_blockstructured::ComputeUniformRectangularMetrics(), testfixtures::viscid::GeneratePoiseuilleExact(), testfixtures::viscid::GenerateViscidShockExact(), plascom2::util::PC2Compare(), TestGrid_CurvilinearMetric(), TestGrid_CurvilinearVGWavy(), TestHDF5GridIO(), TestHDF5PBSGridIO(), TestPlasCom2Output(), TestWENO_ApplyWENO(), and TestWENO_RHS().

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CoordinateData() [2/4]

const std::vector<double>& CoordinateData ( ) const

inline

Definition at line 504 of file Grid.H.

CoordinateData() [3/4]

const double* CoordinateData ( int  inDim ) const

inline

Definition at line 506 of file Grid.H.

References numPointsBuffer.

CoordinateData() [4/4]

double* CoordinateData ( int  inDim )

inline

Definition at line 511 of file Grid.H.

References numPointsBuffer.

CurvilinearMetrics()

int CurvilinearMetrics

(

std::ostream &

messageStream

)

Definition at line 1205 of file Grid.C.

References operators::applyoperator(), bufferInterval, parallel_blockstructured::BufferSize(), bufferSizes, parallel_blockstructured::BufferSizes(), parallel_blockstructured::ComputeJacobianMatrix(), operators::determinant3x3(), parallel_blockstructured::ExchangeJacobianMatrix(), FC_MODULE(), sizeextent::Flatten(), parallel_blockstructured::gridCoordinates, parallel_blockstructured::gridJacobian, parallel_blockstructured::gridMetric, gridSizes, parallel_blockstructured::GridSizes(), sizeextent::InitSimple(), parallel_blockstructured::jacobianMatrix, parallel_blockstructured::jacobianMatrix2, sizeextent::NNodes(), base::numDim, parallel_blockstructured::numPointsBuffer, numStencils, stencilset::numStencils, stencilset::numValues, parallel_blockstructured::PartitionBufferInterval(), parallel_blockstructured::PartitionInterval(), parallel_blockstructured::stencilConnectivity, stencilOffsets, stencilset::stencilOffsets, parallel_blockstructured::stencilSet, stencilSizes, stencilset::stencilSizes, stencilStarts, stencilset::stencilStarts, stencilWeights, stencilset::stencilWeights, operators::yaxm1(), yaxpy(), and operators::zxy().

Referenced by parallel_blockstructured::ComputeMetrics().

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DecompDirs() [1/2]

std::vector<int>& DecompDirs ( )

inline

Definition at line 580 of file Grid.H.

DecompDirs() [2/2]

const std::vector<int>& DecompDirs ( ) const

inline

Definition at line 582 of file Grid.H.

DecompSizes() [1/2]

const std::vector<int>& DecompSizes ( ) const

inline

Definition at line 442 of file Grid.H.

DecompSizes() [2/2]

std::vector<int>& DecompSizes ( )

inline

Definition at line 447 of file Grid.H.

DestroyFlags()

void DestroyFlags ( )

inline

Definition at line 620 of file Grid.H.

Dimension()

int Dimension ( ) const

inline

Definition at line 428 of file Grid.H.

Referenced by parallel_blockstructured::ComputeMetricIdentities(), parallel_blockstructured::ComputeUniformRectangularMetrics(), parallel_blockstructured::ExchangeCoordinates(), parallel_blockstructured::ExchangeJacobianMatrix(), and parallel_blockstructured::SetupThreads().

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DX() [1/2]

const std::vector<double>& DX ( ) const

inline

Definition at line 538 of file Grid.H.

Referenced by testfixtures::viscid::GeneratePoiseuilleExact(), testfixtures::viscid::GenerateViscidShockExact(), TestPlasCom2Output(), TestVelocityGradient(), and TestVelocityGradientPeriodic().

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DX() [2/2]

std::vector<double>& DX ( )

inline

Definition at line 539 of file Grid.H.

ExchangeCoordinates()

int ExchangeCoordinates

(

)

Definition at line 2075 of file Grid.C.

References bufferInterval, parallel_blockstructured::BufferSize(), bufferSizes, parallel_blockstructured::BufferSizes(), CommunicatorObject::CartNeighbors(), parallel_base::Communicator(), halo::CreateMessageBuffers(), halo::DestroyMessageBuffer(), parallel_blockstructured::Dimension(), sizeextent::GetFlatIndices(), parallel_blockstructured::gridCoordinates, gridSizes, parallel_blockstructured::GridSizes(), parallel_blockstructured::Halo(), sizeextent::InitSimple(), base::numDim, parallel_blockstructured::numPointsBuffer, halo::PackMessageBuffers(), parallel_blockstructured::PartitionBufferInterval(), parallel_blockstructured::PartitionInterval(), parallel_blockstructured::periodicDirs, parallel_blockstructured::periodicLengths, halo::ReceiveMessage(), halo::SendMessage(), halo::UnPackMessageBuffers(), and parallel_blockstructured::xyzMessageId.

Referenced by TestGrid_CurvilinearMetric(), TestGrid_CurvilinearVGWavy(), TestGrid_RectilinearMetric(), and TestHDF5PBSGridIO().

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ExchangeJacobianMatrix()

int ExchangeJacobianMatrix

(

std::ostream &

messageStream

)

Definition at line 2159 of file Grid.C.

References parallel_blockstructured::BufferSize(), parallel_blockstructured::Dimension(), parallel_blockstructured::ExchangeNodalData(), parallel_blockstructured::jacobianMatrix, numComponents, base::numDim, and parallel_blockstructured::numPointsBuffer.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics3D(), and parallel_blockstructured::CurvilinearMetrics().

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ExchangeNodalData()

int ExchangeNodalData	(	int	numComponents,
		double *	dataBuffer
	)

Definition at line 818 of file Grid.C.

References CommunicatorObject::CartNeighbors(), parallel_base::Communicator(), halo::CreateMessageBuffers(), halo::DestroyMessageBuffer(), parallel_blockstructured::Halo(), halo::PackMessageBuffers(), halo::ReceiveMessage(), halo::SendMessage(), halo::UnPackMessageBuffers(), and parallel_blockstructured::xyzMessageId.

Referenced by parallel_blockstructured::ComputeMetricIdentities(), parallel_blockstructured::ExchangeJacobianMatrix(), and parallel_blockstructured::GradIJK().

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Finalize()

int Finalize

(

bool

allocateCoordinateData = false

)

Definition at line 2318 of file Grid.C.

References parallel_blockstructured::AllocateCoordinateData(), bufferInterval, pbsintervals::bufferSizes, parallel_blockstructured::dimExtensions, sizeextent::GetFlatIndices(), pbsintervals::gridSizes, sizeextent::InitSimple(), sizeextent::NNodes(), base::numDim, parallel_blockstructured::numPointsBuffer, parallel_blockstructured::numPointsPartition, sizeextent::Overlap(), subregion::partitionBufferIndices, pbsintervals::partitionBufferInterval, pbsintervals::partitionInterval, parallel_blockstructured::partitionIntervals, pbsintervals::partitionSizes, subregion::regionInterval, subregion::regionPartitionBufferInterval, subregion::regionPartitionInterval, parallel_blockstructured::SetNumThreads(), parallel_blockstructured::subRegions, and sizeextent::Sync().

Referenced by parallel_blockstructured::ParallelSetup(), plascom2::io::hdf5::ReadSingle(), plascom2::io::hdf5::ReadSingleState(), TestEOS_ComputeBuffers(), TestEulerKernels(), TestGrid_PBS_IntegratedHalo(), TestHDF5Read2DBlockStructuredGrid(), TestMaxwellRHS(), TestViscidKernels(), and TestViscidKernelsMetrics().

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FlagData() [1/2]

std::vector<int>& FlagData ( )

inline

Definition at line 607 of file Grid.H.

References plascom2::operators::sbp::BufferSize().

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FlagData() [2/2]

const std::vector<int>& FlagData ( ) const

inline

Definition at line 615 of file Grid.H.

FlagMask()

size_t FlagMask	(	int *	iMask,
		int	flagValue = 0,
		int	flagBit = 1
	)		const

Definition at line 1794 of file Grid.C.

References bufferInterval, bufferSizes, parallel_blockstructured::BufferSizes(), parallel_blockstructured::flagData, sizeextent::GetFlatIndices(), sizeextent::InitSimple(), sizeextent::NNodes(), and parallel_blockstructured::PartitionBufferInterval().

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GenerateCoordinates() [1/2]

int GenerateCoordinates

(

std::ostream &

messageStream

)

Definition at line 1628 of file Grid.C.

References parallel_blockstructured::AllocateCoordinateData(), bufferSizes, parallel_blockstructured::BufferSizes(), simulation::grid::CARTESIAN, apptools::DumpContents(), parallel_blockstructured::dX, parallel_blockstructured::gridCoordinates, gridSizes, parallel_blockstructured::GridSizes(), parallel_blockstructured::gridType, sizeextent::NNodes(), base::numDim, parallel_blockstructured::numPointsBuffer, parallel_blockstructured::PartitionBufferInterval(), parallel_blockstructured::PartitionInterval(), parallel_blockstructured::periodicDirs, parallel_blockstructured::periodicLengths, parallel_blockstructured::PhysicalExtent(), parallel_blockstructured::physicalExtent, parallel_blockstructured::scaleFactor, and simulation::grid::UNIRECT.

Referenced by parallel_blockstructured::GenerateGrid(), TestGrid_CartesianMetric(), TestGrid_CurvilinearMetric(), TestGrid_CurvilinearVGWavy(), TestGrid_RectilinearMetric(), TestHDF5GridIO(), TestPlasCom2Output(), TestWENO_ApplyWENO(), and TestWENO_RHS().

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GenerateCoordinates() [2/2]

int GenerateCoordinates	(	int(*)(const std::vector< size_t > &, std::vector< double > &)	,
		std::ostream &
	)

GenerateGrid()

int GenerateGrid	(	int(*)(const std::vector< int > &, const std::vector< double > &, const std::vector< size_t > &, const std::vector< size_t > &, std::vector< double > &)	GridGeneratorFunction,
		std::ostream &	messageStream
	)

Definition at line 1822 of file Grid.C.

References parallel_blockstructured::AllocateCoordinateData(), bufferSizes, parallel_blockstructured::BufferSizes(), parallel_blockstructured::GenerateCoordinates(), parallel_blockstructured::gridCoordinates, parallel_blockstructured::GridGenerationOptions(), parallel_blockstructured::GridGenerationParameters(), gridSizes, parallel_blockstructured::GridSizes(), sizeextent::NNodes(), base::numDim, parallel_blockstructured::numPointsBuffer, parallel_blockstructured::PartitionBufferInterval(), parallel_blockstructured::PartitionInterval(), and parallel_blockstructured::PhysicalExtent().

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GetRegionIndex()

int GetRegionIndex ( const std::string &  regionName ) const

inline

Definition at line 561 of file Grid.H.

GradIJK()

int GradIJK	(	int	numComponents,
		double *	sourceBuffer,
		double *	targetBuffer,
		std::ostream &	messageStream,
		bool	exchange = false
	)

Definition at line 844 of file Grid.C.

References operators::applyoperator(), parallel_blockstructured::BufferSize(), bufferSizes, parallel_blockstructured::BufferSizes(), parallel_blockstructured::ExchangeNodalData(), FC_MODULE(), sizeextent::Flatten(), gridSizes, parallel_blockstructured::GridSizes(), numComponents, base::numDim, pbsintervals::numDim, parallel_blockstructured::numPointsBuffer, numStencils, stencilset::numStencils, stencilset::numValues, parallel_blockstructured::PartitionBufferInterval(), parallel_blockstructured::PartitionInterval(), parallel_blockstructured::partitionIntervals, parallel_blockstructured::stencilConnectivity, stencilOffsets, stencilset::stencilOffsets, parallel_blockstructured::stencilSet, stencilSizes, stencilset::stencilSizes, stencilStarts, stencilset::stencilStarts, stencilWeights, and stencilset::stencilWeights.

Referenced by parallel_blockstructured::ComputeJacobianMatrix(), and parallel_blockstructured::ComputeJacobianMatrix2().

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GridGenerationOptions() [1/2]

std::vector<int>& GridGenerationOptions ( )

inline

Definition at line 649 of file Grid.H.

Referenced by parallel_blockstructured::GenerateGrid().

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GridGenerationOptions() [2/2]

const std::vector<int>& GridGenerationOptions ( ) const

inline

Definition at line 651 of file Grid.H.

GridGenerationParameters() [1/2]

std::vector<double>& GridGenerationParameters ( )

inline

Definition at line 643 of file Grid.H.

Referenced by parallel_blockstructured::GenerateGrid().

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GridGenerationParameters() [2/2]

const std::vector<double>& GridGenerationParameters ( ) const

inline

Definition at line 645 of file Grid.H.

GridSizes() [1/2]

const std::vector<size_t>& GridSizes ( ) const

inline

Definition at line 469 of file Grid.H.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics2D(), parallel_blockstructured::ComputeCurvilinearMetrics3D(), parallel_blockstructured::ComputeJacobianMatrix(), parallel_blockstructured::ComputeMetricIdentities(), parallel_blockstructured::ComputeMetrics(), parallel_blockstructured::ComputeRectilinearMetrics(), parallel_blockstructured::ComputeUniformRectangularMetrics(), parallel_blockstructured::CurvilinearMetrics(), parallel_blockstructured::ExchangeCoordinates(), parallel_blockstructured::GenerateCoordinates(), parallel_blockstructured::GenerateGrid(), testfixtures::viscid::GeneratePoiseuilleExact(), testfixtures::viscid::GenerateViscidShockExact(), parallel_blockstructured::GradIJK(), parallel_blockstructured::ParallelSetup(), application::RunPlasCom2(), TestEOS_ComputeBuffers(), TestEulerKernels(), TestGrid_CurvilinearMetric(), TestGrid_CurvilinearVGWavy(), TestGrid_RectilinearMetric(), TestHDF5GridIO(), TestViscidKernels(), and TestViscidKernelsMetrics().

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GridSizes() [2/2]

std::vector<size_t>& GridSizes ( )

inline

Definition at line 474 of file Grid.H.

Halo()

HaloType& Halo ( )

inline

Definition at line 544 of file Grid.H.

References plascom2::GenerateGrid().

Referenced by parallel_blockstructured::ExchangeCoordinates(), parallel_blockstructured::ExchangeNodalData(), parallel_blockstructured::ParallelSetup(), application::RunPlasCom2(), TestEulerRHS(), TestEulerRHS2(), TestHDF5PBSGridIO(), TestMaxwellRHS(), TestMaxwellRHSTimeIntegrate(), TestPlasCom2Output(), TestVelocityGradient(), TestVelocityGradientPeriodic(), TestViscidRHS(), TestWENO_ApplyWENO(), and TestWENO_RHS().

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Intervals() [1/2]

pbsintervals& Intervals ( )

inline

Definition at line 434 of file Grid.H.

Intervals() [2/2]

const pbsintervals& Intervals ( ) const

inline

Definition at line 435 of file Grid.H.

Jacobian() [1/2]

std::vector<double>& Jacobian ( )

inline

Definition at line 624 of file Grid.H.

References gridJacobian.

Referenced by TestGrid_CartesianMetric(), TestGrid_CurvilinearMetric(), and TestGrid_RectilinearMetric().

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Jacobian() [2/2]

std::vector<double> Jacobian ( ) const

inline

Definition at line 625 of file Grid.H.

References gridJacobian.

JacobianMatrix() [1/2]

std::vector<double>& JacobianMatrix ( )

inline

Definition at line 626 of file Grid.H.

Referenced by TestGrid_CurvilinearMetric().

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JacobianMatrix() [2/2]

std::vector<double> JacobianMatrix ( ) const

inline

Definition at line 627 of file Grid.H.

References numComponents.

Metric() [1/2]

std::vector<double>& Metric ( )

inline

Definition at line 622 of file Grid.H.

References gridMetric.

Referenced by TestGrid_CartesianMetric(), TestGrid_CurvilinearMetric(), and TestGrid_RectilinearMetric().

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Metric() [2/2]

std::vector<double> Metric ( ) const

inline

Definition at line 623 of file Grid.H.

References gridMetric.

NumberOfThreads()

int NumberOfThreads ( ) const

inline

Definition at line 405 of file Grid.H.

ParallelSetup()

int ParallelSetup	(	fixtures::CommunicatorType &	inComm,
		pcpp::ParallelTopologyInfoType &	cartInfo,
		int	haloDepth,
		std::ostream &	messageStream
	)

Perform cartesian communicator initialization for a grid.

To be used after global grid sizes are initialized. inComm fixtures::CommunicatorType should be a communicator group including only endpoints that will contain part of this grid cartInfo pcpp::ParallelTopologyInfoType indicating how the parallel topology should be set up. Can contain optional user guidance for grid partitioning. haloDepth Used to determine the uniform halo depth to use for communication with neighboring partitions. messageStream std::ostream object to contain any messgaes produced by this routine.

Definition at line 22 of file Grid.C.

References bufferSizes, parallel_blockstructured::BufferSizes(), CommunicatorObject::CartCoordinates(), CommunicatorObject::CartDimensions(), pcpp::report::CartesianSetup(), parallel_base::Communicator(), halo::CreateLocalHaloExtents(), halo::CreateRemoteHaloExtents(), halo::CreateSimpleRecvIndices(), halo::CreateSimpleSendIndices(), apptools::DumpContents(), parallel_blockstructured::Finalize(), gridSizes, pbsintervals::gridSizes, parallel_blockstructured::GridSizes(), parallel_blockstructured::Halo(), sizeextent::InitSimple(), paralleltopologyinfo::isPeriodic, base::numDim, parallel_blockstructured::PartitionBufferInterval(), pcpp::util::PartitionCartesianInterval(), parallel_blockstructured::PartitionInterval(), parallel_blockstructured::partitionIntervals, parallel_blockstructured::PeriodicDirs(), parallel_blockstructured::periodicDirs, parallel_blockstructured::SetDimensionExtensions(), halo::SetGridInterval(), halo::SetLocalBufferSizes(), halo::SetLocalHaloExtents(), halo::SetLocalPartitionExtent(), halo::SetNeighbors(), halo::SetPartitionInterval(), halo::SetRemoteHaloExtents(), and pcpp::comm::SetupCartesianTopology().

Referenced by TestGrid_CartesianMetric(), TestGrid_CurvilinearMetric(), TestGrid_CurvilinearVGWavy(), TestGrid_RectilinearMetric(), TestHDF5GridIO(), TestHDF5PBSGridIO(), TestPlasCom2Input(), and TestPlasCom2Output().

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PartitionBufferInterval() [1/2]

pcpp::IndexIntervalType& PartitionBufferInterval ( )

inline

Definition at line 519 of file Grid.H.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics2D(), parallel_blockstructured::ComputeCurvilinearMetrics3D(), parallel_blockstructured::ComputeJacobianMatrix(), parallel_blockstructured::ComputeMetricIdentities(), parallel_blockstructured::ComputeMetrics(), parallel_blockstructured::ComputeRectilinearMetrics(), parallel_blockstructured::ComputeUniformRectangularMetrics(), parallel_blockstructured::CurvilinearMetrics(), parallel_blockstructured::ExchangeCoordinates(), parallel_blockstructured::FlagMask(), parallel_blockstructured::GenerateCoordinates(), parallel_blockstructured::GenerateGrid(), testfixtures::viscid::GeneratePoiseuilleExact(), testfixtures::viscid::GenerateViscidShockExact(), parallel_blockstructured::GradIJK(), parallel_blockstructured::ParallelSetup(), plascom2::io::hdf5::ReadSingle(), plascom2::io::hdf5::ReadSingleState(), application::RunPlasCom2(), parallel_blockstructured::SetupThreads(), TestEOS_ComputeBuffers(), TestEulerKernels(), TestEulerRHS(), TestEulerRHS2(), TestGrid_CurvilinearMetric(), TestGrid_CurvilinearVGWavy(), TestGrid_PBS_IntegratedHalo(), TestGrid_RectilinearMetric(), TestHDF5PBSGridIO(), TestMaxwellRHS(), TestMaxwellRHSTimeIntegrate(), TestPlasCom2Output(), TestVelocityGradient(), TestVelocityGradientPeriodic(), TestViscidKernels(), TestViscidKernelsMetrics(), TestViscidRHS(), TestWENO_ApplyWENO(), and TestWENO_RHS().

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PartitionBufferInterval() [2/2]

const pcpp::IndexIntervalType& PartitionBufferInterval ( ) const

inline

Definition at line 520 of file Grid.H.

PartitionInterval() [1/2]

pcpp::IndexIntervalType& PartitionInterval ( )

inline

Definition at line 500 of file Grid.H.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics2D(), parallel_blockstructured::ComputeCurvilinearMetrics3D(), parallel_blockstructured::ComputeJacobianMatrix(), parallel_blockstructured::ComputeMetricIdentities(), parallel_blockstructured::ComputeMetrics(), parallel_blockstructured::ComputeRectilinearMetrics(), parallel_blockstructured::ComputeUniformRectangularMetrics(), parallel_blockstructured::CurvilinearMetrics(), parallel_blockstructured::ExchangeCoordinates(), parallel_blockstructured::GenerateCoordinates(), parallel_blockstructured::GenerateGrid(), testfixtures::viscid::GeneratePoiseuilleExact(), testfixtures::viscid::GenerateViscidShockExact(), parallel_blockstructured::GradIJK(), parallel_blockstructured::ParallelSetup(), plascom2::io::hdf5::ReadSingle(), plascom2::io::hdf5::ReadSingleState(), application::RunPlasCom2(), parallel_blockstructured::SetupThreads(), TestGrid_CurvilinearMetric(), TestGrid_CurvilinearVGWavy(), TestGrid_PBS_IntegratedHalo(), TestGrid_RectilinearMetric(), TestHDF5GridIO(), TestHDF5PBSGridIO(), TestHDF5Read2DBlockStructuredGrid(), TestMaxwellRHS(), TestMaxwellRHSTimeIntegrate(), TestPlasCom2Output(), TestVelocityGradient(), TestVelocityGradientPeriodic(), TestWENO_ApplyWENO(), and TestWENO_RHS().

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PartitionInterval() [2/2]

const pcpp::IndexIntervalType& PartitionInterval ( ) const

inline

Definition at line 501 of file Grid.H.

PartitionSize()

size_t PartitionSize ( ) const

inline

Definition at line 432 of file Grid.H.

PartitionSizes()

const std::vector<size_t>& PartitionSizes ( ) const

inline

Definition at line 487 of file Grid.H.

Referenced by TestHDF5GridIO().

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PeriodicDirs() [1/2]

std::vector<bool>& PeriodicDirs ( )

inline

Definition at line 576 of file Grid.H.

Referenced by parallel_blockstructured::ParallelSetup().

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PeriodicDirs() [2/2]

const std::vector<bool>& PeriodicDirs ( ) const

inline

Definition at line 578 of file Grid.H.

PhysicalExtent() [1/2]

const std::vector<double>& PhysicalExtent ( ) const

inline

Definition at line 533 of file Grid.H.

Referenced by parallel_blockstructured::GenerateCoordinates(), parallel_blockstructured::GenerateGrid(), testfixtures::viscid::GeneratePoiseuilleExact(), TestEOS_ComputeBuffers(), TestEulerKernels(), TestHDF5GridIO(), TestViscidKernels(), and TestViscidKernelsMetrics().

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PhysicalExtent() [2/2]

std::vector<double>& PhysicalExtent ( )

inline

Definition at line 534 of file Grid.H.

SetDecompDirs()

void SetDecompDirs ( const std::vector< int > &  inDecomp )

inline

Definition at line 584 of file Grid.H.

SetDecompSizes()

void SetDecompSizes ( const std::vector< int > &  inDecomp )

inline

Definition at line 437 of file Grid.H.

SetDimensionExtensions()

void SetDimensionExtensions ( const std::vector< size_t > &  inExtensions )

inline

Definition at line 492 of file Grid.H.

Referenced by parallel_blockstructured::ParallelSetup(), TestGrid_PBS_IntegratedHalo(), and TestMaxwellRHS().

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SetGridGenerationOptions()

void SetGridGenerationOptions ( const std::vector< int > &  inOptions )

inline

Definition at line 653 of file Grid.H.

SetGridGenerationParameters()

void SetGridGenerationParameters ( const std::vector< double > &  inParams )

inline

Definition at line 647 of file Grid.H.

SetGridSizes()

void SetGridSizes ( const std::vector< size_t > &  inSize )

inline

Definition at line 452 of file Grid.H.

Referenced by plascom2::io::hdf5::ReadSingle(), plascom2::io::hdf5::ReadSingleState(), TestGrid_CartesianMetric(), TestGrid_CurvilinearMetric(), TestGrid_CurvilinearVGWavy(), TestGrid_PBS_IntegratedHalo(), TestGrid_RectilinearMetric(), TestHDF5PBSGridIO(), TestHDF5Read2DBlockStructuredGrid(), TestMaxwellRHS(), TestMaxwellRHSTimeIntegrate(), TestPlasCom2Input(), TestPlasCom2Output(), TestVelocityGradient(), and TestVelocityGradientPeriodic().

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SetGridSpacings()

void SetGridSpacings ( const std::vector< double > &  inSpacing )

inline

Definition at line 540 of file Grid.H.

Referenced by TestEOS_ComputeBuffers(), TestEulerKernels(), TestHDF5GridIO(), TestMaxwellRHS(), TestViscidKernels(), and TestViscidKernelsMetrics().

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SetHalo()

void SetHalo ( halo &  inHalo )

inline

Definition at line 543 of file Grid.H.

SetNumThreads()

void SetNumThreads

(

int

numThreads

)

Definition at line 2291 of file Grid.C.

References pbsintervals::bufferSizes, subregion::partitionBufferIndices, pbsintervals::partitionBufferInterval, parallel_blockstructured::partitionIntervals, subregion::regionPartitionBufferInterval, subregion::regionPartitionInterval, parallel_blockstructured::subRegions, pbsintervals::threadBufferIntervals, subregion::threadPartitionBufferIndices, subregion::threadPartitionBufferIntervals, pbsintervals::threadPartitionBufferIntervals, subregion::threadPartitionIntervals, and pbsintervals::threadPartitionIntervals.

Referenced by parallel_blockstructured::Finalize(), parallel_blockstructured::SetupThreads(), TestEulerRHS2(), and TestViscidRHS().

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SetPartitionInterval()

void SetPartitionInterval ( const pcpp::IndexIntervalType &  inInterval )

inline

Definition at line 497 of file Grid.H.

SetPartitionSizes()

void SetPartitionSizes ( const std::vector< size_t > &  inPartSize )

inline

Definition at line 480 of file Grid.H.

SetPeriodicDirs()

void SetPeriodicDirs ( const std::vector< bool > &  inPeriodic )

inline

Definition at line 586 of file Grid.H.

Referenced by TestVelocityGradient(), and TestVelocityGradientPeriodic().

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SetPeriodicLengths()

void SetPeriodicLengths ( const std::vector< double > &  inLengths )

inline

Definition at line 588 of file Grid.H.

Referenced by TestGrid_CurvilinearVGWavy().

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SetPhysicalExtent()

void SetPhysicalExtent ( const std::vector< double > &  inExtent )

inline

Definition at line 535 of file Grid.H.

Referenced by TestGrid_CartesianMetric(), TestMaxwellRHSTimeIntegrate(), TestVelocityGradient(), and TestVelocityGradientPeriodic().

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SetScaleFactor()

void SetScaleFactor ( const std::vector< double > &  inScale )

inline

Definition at line 602 of file Grid.H.

SetThreadDecompDirs()

void SetThreadDecompDirs ( const std::vector< int > &  inThread )

inline

Definition at line 594 of file Grid.H.

SetType()

void SetType ( int  inType )

inline

Definition at line 596 of file Grid.H.

References gridType.

Referenced by TestGrid_CurvilinearMetric(), TestGrid_CurvilinearVGWavy(), TestGrid_RectilinearMetric(), and TestPlasCom2Output().

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SetupDifferentialOperator()

int SetupDifferentialOperator	(	plascom2::operators::stencilset *	inStencilSet,
		int *	inStencilConnectivity
	)

Definition at line 1619 of file Grid.C.

References parallel_blockstructured::stencilConnectivity, and parallel_blockstructured::stencilSet.

Referenced by TestGrid_CurvilinearMetric(), TestGrid_CurvilinearVGWavy(), and TestGrid_RectilinearMetric().

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SetupThreads()

int SetupThreads

(

std::vector< int > &

numThreadPartitions

)

Definition at line 2174 of file Grid.C.

References bufferInterval, bufferSizes, pbsintervals::bufferSizes, parallel_blockstructured::BufferSizes(), parallel_blockstructured::Dimension(), parallel_blockstructured::errorState, sizeextent::GetFlatIndices(), sizeextent::InitSimple(), sizeextent::NNodes(), base::numDim, sizeextent::Overlap(), parallel_blockstructured::PartitionBufferInterval(), parallel_blockstructured::PartitionInterval(), parallel_blockstructured::partitionIntervals, subregion::regionInterval, parallel_blockstructured::SetNumThreads(), pcpp::util::SimplePartitionInterval(), parallel_blockstructured::subRegions, sizeextent::Sync(), pbsintervals::threadBufferIntervals, parallel_blockstructured::threadDecompDirs, subregion::threadPartitionBufferIndices, subregion::threadPartitionBufferIntervals, pbsintervals::threadPartitionBufferIntervals, subregion::threadPartitionIntervals, and pbsintervals::threadPartitionIntervals.

Referenced by TestVelocityGradient(), TestVelocityGradientPeriodic(), TestWENO_ApplyWENO(), and TestWENO_RHS().

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SubRegions() [1/2]

const std::vector<subregion>& SubRegions ( ) const

inline

Definition at line 555 of file Grid.H.

SubRegions() [2/2]

std::vector<subregion>& SubRegions ( )

inline

Definition at line 558 of file Grid.H.

ThreadBufferIntervals() [1/2]

std::vector<pcpp::IndexIntervalType>& ThreadBufferIntervals ( )

inline

Definition at line 422 of file Grid.H.

ThreadBufferIntervals() [2/2]

const std::vector<pcpp::IndexIntervalType>& ThreadBufferIntervals ( ) const

inline

Definition at line 425 of file Grid.H.

ThreadDecompDirs() [1/2]

std::vector<int>& ThreadDecompDirs ( )

inline

Definition at line 590 of file Grid.H.

ThreadDecompDirs() [2/2]

const std::vector<int>& ThreadDecompDirs ( ) const

inline

Definition at line 592 of file Grid.H.

ThreadPartitionBufferIntervals() [1/2]

std::vector<pcpp::IndexIntervalType>& ThreadPartitionBufferIntervals ( )

inline

Definition at line 416 of file Grid.H.

ThreadPartitionBufferIntervals() [2/2]

const std::vector<pcpp::IndexIntervalType>& ThreadPartitionBufferIntervals ( ) const

inline

Definition at line 419 of file Grid.H.

ThreadPartitionIntervals() [1/2]

std::vector<pcpp::IndexIntervalType>& ThreadPartitionIntervals ( )

inline

Definition at line 410 of file Grid.H.

ThreadPartitionIntervals() [2/2]

const std::vector<pcpp::IndexIntervalType>& ThreadPartitionIntervals ( ) const

inline

Definition at line 413 of file Grid.H.

Type()

int Type ( ) const

inline

Definition at line 600 of file Grid.H.

References gridType.

Member Data Documentation

decompDirs

std::vector<int> decompDirs

protected

Definition at line 698 of file Grid.H.

dimExtensions

std::vector<size_t> dimExtensions

protected

Number of "halo/ghost" points in each (+/-) of the 2*numDim directions.

Definition at line 667 of file Grid.H.

Referenced by parallel_blockstructured::Finalize().

dX

std::vector<double> dX

protected

Grid spacing data structure (size depends on gridTopoType)

Definition at line 686 of file Grid.H.

Referenced by parallel_blockstructured::ComputeUniformRectangularMetrics(), and parallel_blockstructured::GenerateCoordinates().

errorState

int errorState

protected

Definition at line 706 of file Grid.H.

Referenced by parallel_blockstructured::SetupThreads().

flagData

std::vector<int> flagData

protected

Definition at line 681 of file Grid.H.

Referenced by parallel_blockstructured::FlagMask().

globalBufferInterval

pcpp::IndexIntervalType globalBufferInterval

protected

The local buffer interval wrt the global grid size [yet unused].

Definition at line 669 of file Grid.H.

gridCoordinates

std::vector<double> gridCoordinates

protected

The coordinate buffer.

Definition at line 671 of file Grid.H.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics2D(), parallel_blockstructured::ComputeCurvilinearMetrics3D(), parallel_blockstructured::ComputeJacobianMatrix(), parallel_blockstructured::ComputeRectilinearMetrics(), parallel_blockstructured::ComputeUniformRectangularMetrics(), parallel_blockstructured::CurvilinearMetrics(), parallel_blockstructured::ExchangeCoordinates(), parallel_blockstructured::GenerateCoordinates(), and parallel_blockstructured::GenerateGrid().

gridGenOptions

std::vector<int> gridGenOptions

protected

Definition at line 680 of file Grid.H.

gridGenParams

std::vector<double> gridGenParams

protected

Definition at line 679 of file Grid.H.

gridHalo

halo gridHalo

protected

Halo object for communicating data with grid "neighbors".

Definition at line 694 of file Grid.H.

gridJacobian

std::vector<double> gridJacobian

protected

Definition at line 676 of file Grid.H.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics2D(), parallel_blockstructured::ComputeCurvilinearMetrics3D(), parallel_blockstructured::ComputeRectilinearMetrics(), parallel_blockstructured::ComputeUniformRectangularMetrics(), and parallel_blockstructured::CurvilinearMetrics().

gridMetric

std::vector<double> gridMetric

protected

Grid metrics (sizes depend on gridTopoType)

Definition at line 675 of file Grid.H.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics2D(), parallel_blockstructured::ComputeCurvilinearMetrics3D(), parallel_blockstructured::ComputeMetricIdentities(), parallel_blockstructured::ComputeRectilinearMetrics(), parallel_blockstructured::ComputeUniformRectangularMetrics(), and parallel_blockstructured::CurvilinearMetrics().

gridTopoType

TopoType gridTopoType

protected

The topology type.

Definition at line 673 of file Grid.H.

gridType

int gridType

protected

GridType.

Definition at line 654 of file Grid.H.

Referenced by parallel_blockstructured::ComputeMetricIdentities(), parallel_blockstructured::ComputeMetrics(), and parallel_blockstructured::GenerateCoordinates().

haloPtr

halo* haloPtr

protected

Definition at line 695 of file Grid.H.

jacobianMatrix

std::vector<double> jacobianMatrix

protected

Definition at line 677 of file Grid.H.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics3D(), parallel_blockstructured::ComputeJacobianMatrix(), parallel_blockstructured::ComputeJacobianMatrix2(), parallel_blockstructured::CurvilinearMetrics(), and parallel_blockstructured::ExchangeJacobianMatrix().

jacobianMatrix2

std::vector<double> jacobianMatrix2

protected

Definition at line 678 of file Grid.H.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics3D(), parallel_blockstructured::ComputeJacobianMatrix2(), and parallel_blockstructured::CurvilinearMetrics().

metricMessageId

int metricMessageId

protected

Definition at line 701 of file Grid.H.

numPointsBuffer

size_t numPointsBuffer

protected

Number of points in the buffer.

Definition at line 661 of file Grid.H.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics2D(), parallel_blockstructured::ComputeCurvilinearMetrics3D(), parallel_blockstructured::ComputeJacobianMatrix(), parallel_blockstructured::ComputeJacobianMatrix2(), parallel_blockstructured::ComputeMetricIdentities(), parallel_blockstructured::ComputeRectilinearMetrics(), parallel_blockstructured::ComputeUniformRectangularMetrics(), parallel_blockstructured::CurvilinearMetrics(), parallel_blockstructured::ExchangeCoordinates(), parallel_blockstructured::ExchangeJacobianMatrix(), parallel_blockstructured::Finalize(), parallel_blockstructured::GenerateCoordinates(), parallel_blockstructured::GenerateGrid(), parallel_blockstructured::GradIJK(), halo::PackMessageBuffers(), halo::SetLocalBufferSizes(), and halo::UnPackMessageBuffers().

numPointsPartition

size_t numPointsPartition

protected

Number of points in the partition.

Definition at line 663 of file Grid.H.

Referenced by parallel_blockstructured::Finalize().

partitionIntervals

pbsintervals partitionIntervals

protected

The relevant partition intervals.

Definition at line 665 of file Grid.H.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics2D(), parallel_blockstructured::ComputeJacobianMatrix(), parallel_blockstructured::ComputeJacobianMatrix2(), parallel_blockstructured::Finalize(), parallel_blockstructured::GradIJK(), parallel_blockstructured::ParallelSetup(), parallel_blockstructured::SetNumThreads(), and parallel_blockstructured::SetupThreads().

periodicDirs

std::vector<bool> periodicDirs

protected

Definition at line 696 of file Grid.H.

Referenced by parallel_blockstructured::ExchangeCoordinates(), parallel_blockstructured::GenerateCoordinates(), and parallel_blockstructured::ParallelSetup().

periodicLengths

std::vector<double> periodicLengths

protected

Definition at line 697 of file Grid.H.

Referenced by parallel_blockstructured::ExchangeCoordinates(), and parallel_blockstructured::GenerateCoordinates().

physicalExtent

std::vector<double> physicalExtent

protected

Physical grid extent (when applicable)

Definition at line 684 of file Grid.H.

Referenced by parallel_blockstructured::GenerateCoordinates().

scaleFactor

std::vector<double> scaleFactor

protected

Grid scaling factor.

Definition at line 688 of file Grid.H.

Referenced by parallel_blockstructured::GenerateCoordinates().

stencilConnectivity

int* stencilConnectivity

protected

Definition at line 691 of file Grid.H.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics2D(), parallel_blockstructured::ComputeMetricIdentities(), parallel_blockstructured::ComputeMetrics(), parallel_blockstructured::ComputeRectilinearMetrics(), parallel_blockstructured::CurvilinearMetrics(), parallel_blockstructured::GradIJK(), and parallel_blockstructured::SetupDifferentialOperator().

stencilSet

plascom2::operators::stencilset* stencilSet

protected

Differential operator.

Definition at line 690 of file Grid.H.

Referenced by parallel_blockstructured::ComputeCurvilinearMetrics2D(), parallel_blockstructured::ComputeMetricIdentities(), parallel_blockstructured::ComputeMetrics(), parallel_blockstructured::ComputeRectilinearMetrics(), parallel_blockstructured::CurvilinearMetrics(), parallel_blockstructured::GradIJK(), and parallel_blockstructured::SetupDifferentialOperator().

subRegions

std::vector<subregion> subRegions

protected

Sub-regions and boundaries.

Definition at line 704 of file Grid.H.

Referenced by parallel_blockstructured::Finalize(), parallel_blockstructured::SetNumThreads(), and parallel_blockstructured::SetupThreads().

threadDecompDirs

std::vector<int> threadDecompDirs

protected

Definition at line 699 of file Grid.H.

Referenced by parallel_blockstructured::SetupThreads().

xyzMessageId

int xyzMessageId

protected

Definition at line 700 of file Grid.H.

Referenced by parallel_blockstructured::ExchangeCoordinates(), and parallel_blockstructured::ExchangeNodalData().

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The documentation for this class was generated from the following files:

• Grid.H
• Grid.C