Classes
class	base

struct	configuration

Functions
int	FileInfo (const std::string &hdfFileName, pcpp::io::simfileinfo &fileInfo, std::ostream &messageStream)

int	FileInfo (const std::string &hdfFileName, pcpp::io::simfileinfo &fileInfo, fixtures::CommunicatorType &inComm, std::ostream &messageStream)

template<typename GridType >
int	ReadGrid (hid_t parentGroupID, const configuration &hdfConfig, const std::string &gridName, GridType &gridData, fixtures::CommunicatorType &inComm, std::ostream &messageStream)

template<typename GridType >
int	ParallelReadBlockStructuredGrid (const std::string &gridName, const std::string &parentGroupName, GridType &gridData, configuration &hdfConfig, const std::string &hdfFileName, fixtures::CommunicatorType &gridComm, std::ostream &messageStream)

template<typename GridType >
int	WriteGrid (const GridType &inGrid, const std::string &gridName, const std::string &parentPath, base &hdfFile)

template<typename GridType >
int	ReadGrid (GridType &inGrid, const std::string &gridPath, base &hdfFile, bool reverseRead=true)

template<typename StateType >
int	WriteStateAttributes (const StateType &inState, const char attributeLocation, const std::string &filePath, base &hdfFile)
	Writes state data matching attributeLocation into HDF5 attributes at filePath. More...

template<typename StateType >
int	ReadStateAttributes (StateType &inState, const char attributeLocation, const std::string &filePath, base &hdfFile)
	Reads state data matching attributeLocation into HDF5 attributes at filePath. More...

template<typename StateType >
int	WriteStateNodeData (const StateType &inState, const std::vector< size_t > &gridSizes, const std::vector< size_t > &partitionSizes, const std::vector< size_t > &partitionStarts, const std::vector< size_t > &bufferSizes, const std::vector< size_t > &partitionBufferStarts, const std::string &filePath, base &hdfFile)

template<typename StateType >
int	ReadStateNodeData (StateType &inState, const std::vector< size_t > &gridSizes, const std::vector< size_t > &partitionSizes, const std::vector< size_t > &partitionStarts, const std::vector< size_t > &bufferSizes, const std::vector< size_t > &partitionBufferStarts, const std::string &filePath, base &hdfFile, bool reverseRead=true)

int	PlasCom2FileInfo (pcpp::io::hdf5::base &hdf5File, simfileinfo &fileInfo, std::ostream &messageStream)

template<typename GridType >
int	FetchGridData (GridType &inGrid, const std::string &gridName, const std::string &gridFileName, std::ostream &messageStream)

template<typename StateType , typename GridType >
int	FetchStateData (const std::string &fileName, const std::string &domainName, GridType &inGrid, StateType &inState, std::ostream &messageStream)

int	LegacyFileInfo (hid_t rootGroupID, simfileinfo &fileInfo, std::ostream &messageStream)

int	LegacyFileInfo (pcpp::io::hdf5::base &hdf5File, simfileinfo &fileInfo, std::ostream &messageStream)

Function Documentation

◆ FetchGridData()

int pcpp::io::hdf5::FetchGridData	(	GridType &	inGrid,
		const std::string &	gridName,
		const std::string &	gridFileName,
		std::ostream &	messageStream
	)

Definition at line 1746 of file PCPPHDF5.H.

References base::Close(), FileInfo(), simfileinfo::formatBits, pcpp::io::HASGEOMETRY, pcpp::io::ISLEGACY, base::Open(), CommunicatorObject::Rank(), and ReadGrid().

Referenced by application::ConfigureSimulation(), and TestPlasCom2Input().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ FetchStateData()

int pcpp::io::hdf5::FetchStateData	(	const std::string &	fileName,
		const std::string &	domainName,
		GridType &	inGrid,
		StateType &	inState,
		std::ostream &	messageStream
	)

Todo:: fix hard-coded grid name in pcpp hdf5 state fetch

Definition at line 1816 of file PCPPHDF5.H.

References bufferSizes, base::Close(), simulation::state::ConvertLegacyState(), base::Exists(), FileInfo(), simfileinfo::formatBits, gridSizes, pcpp::io::HASSIMULATION, pcpp::io::ISLEGACY, numPoints, base::Open(), CommunicatorObject::Rank(), ReadStateAttributes(), and ReadStateNodeData().

Referenced by application::RunPlasCom2().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ FileInfo() [1/2]

int FileInfo	(	const std::string &	hdfFileName,
		pcpp::io::simfileinfo &	fileInfo,
		std::ostream &	messageStream
	)

Definition at line 621 of file PCPPHDF5.C.

References simfileinfo::fileName, simfileinfo::formatBits, pcpp::io::ISLEGACY, pcpp::io::ISPLASCOM2, LegacyFileInfo(), and PlasCom2FileInfo().

Referenced by plascom2::util::ConvertLegacyConfiguration(), FetchGridData(), FetchStateData(), FileInfo(), plascom2::util::PC2Compare(), PC2FileInfo(), application::RunPlasCom2(), TestHDF5GridIO(), TestHDF5LegacyFileInfo(), TestHDF5PBSGridIO(), TestHDF5Read2DBlockStructuredGrid(), and TestPlasCom2Input().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ FileInfo() [2/2]

int FileInfo	(	const std::string &	hdfFileName,
		pcpp::io::simfileinfo &	fileInfo,
		fixtures::CommunicatorType &	inComm,
		std::ostream &	messageStream
	)

Definition at line 666 of file PCPPHDF5.C.

References CommunicatorObject::Check(), FileInfo(), CommunicatorObject::Rank(), CommunicatorObject::SetErr(), and CommunicatorObject::StreamBroadCast().

Here is the call graph for this function:

◆ LegacyFileInfo() [1/2]

int pcpp::io::hdf5::LegacyFileInfo	(	hid_t	rootGroupID,
		simfileinfo &	fileInfo,
		std::ostream &	messageStream
	)

Definition at line 147 of file PCPPHDF5.C.

References simfileinfo::fileName, simfileinfo::formatBits, simfileinfo::gridNames, simfileinfo::gridNumDimensions, gridSizes, simfileinfo::gridSizes, pcpp::io::HASAUXDATA, pcpp::io::HASGRID, pcpp::io::HASIBLANK, pcpp::io::HASSTATE, pcpp::io::HASTARGDATA, pcpp::io::ISLEGACY, simfileinfo::numAuxVars, and simfileinfo::numGrids.

◆ LegacyFileInfo() [2/2]

int pcpp::io::hdf5::LegacyFileInfo	(	pcpp::io::hdf5::base &	hdf5File,
		simfileinfo &	fileInfo,
		std::ostream &	messageStream
	)

Definition at line 469 of file PCPPHDF5.C.

References metadataset::AddField(), apptools::DumpContents(), base::Exists(), simfileinfo::fileName, simfileinfo::formatBits, simfileinfo::gridNames, simfileinfo::gridNumDimensions, gridSizes, simfileinfo::gridSizes, pcpp::io::HASAUXDATA, pcpp::io::HASGRID, pcpp::io::HASIBLANK, pcpp::io::HASSTATE, pcpp::io::HASTARGDATA, simfileinfo::legacyHeader, base::Name(), simfileinfo::numAuxVars, simfileinfo::numGrids, base::ReadAttribute(), ix::util::RenewStream(), simfileinfo::simStep, simfileinfo::simTime, simfileinfo::simulationParamDictionary, and simfileinfo::simulationStateDictionary.

Referenced by FileInfo().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ ParallelReadBlockStructuredGrid()

int pcpp::io::hdf5::ParallelReadBlockStructuredGrid	(	const std::string &	gridName,
		const std::string &	parentGroupName,
		GridType &	gridData,
		configuration &	hdfConfig,
		const std::string &	hdfFileName,
		fixtures::CommunicatorType &	gridComm,
		std::ostream &	messageStream
	)

Definition at line 1089 of file PCPPHDF5.H.

References CommunicatorObject::Comm().

Here is the call graph for this function:

◆ PlasCom2FileInfo()

int PlasCom2FileInfo	(	pcpp::io::hdf5::base &	hdf5File,
		simfileinfo &	fileInfo,
		std::ostream &	messageStream
	)

Definition at line 276 of file PCPPHDF5.C.

References base::AttributeExists(), simfileinfo::domainGridNames, simfileinfo::domainGridPaths, simfileinfo::domainNames, simfileinfo::domainParamDictionaries, simfileinfo::domainStateDictionaries, base::Exists(), simfileinfo::fileName, simfileinfo::formatBits, simfileinfo::geometryGridNames, simfileinfo::geometryGridSizes, simfileinfo::geometryNames, simfileinfo::gridNames, simfileinfo::gridNumDimensions, gridSizes, simfileinfo::gridSizes, pcpp::io::HASCONFIG, pcpp::io::HASGEOMETRY, pcpp::io::HASGLOBAL, pcpp::io::HASGRID, pcpp::io::HASSIMULATION, pcpp::io::HASSTATE, base::Name(), simfileinfo::numDomains, simfileinfo::numGeometries, simfileinfo::numGrids, base::ReadAttribute(), simfileinfo::simStep, simfileinfo::simTime, simfileinfo::simulationParamDictionary, simfileinfo::simulationStateDictionary, and apptools::TokenizeString().

Referenced by FileInfo(), and ReadStateNodeData().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ ReadGrid() [1/2]

int pcpp::io::hdf5::ReadGrid	(	hid_t	parentGroupID,
		const configuration &	hdfConfig,
		const std::string &	gridName,
		GridType &	gridData,
		fixtures::CommunicatorType &	inComm,
		std::ostream &	messageStream
	)

Definition at line 927 of file PCPPHDF5.H.

References configuration::collectiveMode, and numPoints.

Referenced by FetchGridData(), plascom2::io::hdf5::ReadSingle(), plascom2::io::hdf5::ReadSingleState(), TestHDF5GridIO(), and TestHDF5PBSGridIO().

Here is the caller graph for this function:

◆ ReadGrid() [2/2]

int pcpp::io::hdf5::ReadGrid	(	GridType &	inGrid,
		const std::string &	gridPath,
		base &	hdfFile,
		bool	reverseRead = `true`
	)

Definition at line 1255 of file PCPPHDF5.H.

References bufferSize, apptools::DumpContents(), base::Exists(), CommunicatorObject::Rank(), base::ReadAttribute(), and base::ReadHyperSlab().

Here is the call graph for this function:

◆ ReadStateAttributes()

int pcpp::io::hdf5::ReadStateAttributes	(	StateType &	inState,
		const char	attributeLocation,
		const std::string &	filePath,
		base &	hdfFile
	)

Reads state data matching attributeLocation into HDF5 attributes at filePath.

Loops through state metadata to find data items with location of attributeLocation and reads each from an HDF5 attribute (if it exists) at the filePath within the given HDF5 file.

Check data size against attribute dataspace and toss an error on mismatch

Definition at line 1466 of file PCPPHDF5.H.

References metadata::dsize, base::Exists(), metadata::loc, metadata::name, metadata::ncomp, and base::ReadAttribute().

Referenced by FetchStateData(), plascom2::io::hdf5::ReadSingle(), plascom2::io::hdf5::ReadSingleState(), and TestHDF5PBSGridIO().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ ReadStateNodeData()

int pcpp::io::hdf5::ReadStateNodeData	(	StateType &	inState,
		const std::vector< size_t > &	gridSizes,
		const std::vector< size_t > &	partitionSizes,
		const std::vector< size_t > &	partitionStarts,
		const std::vector< size_t > &	bufferSizes,
		const std::vector< size_t > &	partitionBufferStarts,
		const std::string &	filePath,
		base &	hdfFile,
		bool	reverseRead = `true`
	)

Todo:: bring this back as an object-local message [mtc]

Definition at line 1629 of file PCPPHDF5.H.

References metadata::dsize, base::Exists(), metadata::loc, metadata::name, metadata::ncomp, numPointsBuffer, PlasCom2FileInfo(), and base::ReadHyperSlab().

Referenced by FetchStateData(), plascom2::io::hdf5::ReadSingle(), plascom2::io::hdf5::ReadSingleState(), and TestHDF5PBSGridIO().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ WriteGrid()

int pcpp::io::hdf5::WriteGrid	(	const GridType &	inGrid,
		const std::string &	gridName,
		const std::string &	parentPath,
		base &	hdfFile
	)

Definition at line 1131 of file PCPPHDF5.H.

References bufferSize, base::CreateAttribute(), base::CreateGroup(), base::Exists(), sizeextent::InitSimple(), and base::WriteHyperSlab().

Referenced by plascom2::io::hdf5::OutputSingle(), TestGrid_RectilinearMetric(), TestHDF5GridIO(), TestHDF5PBSGridIO(), and TestPlasCom2Output().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ WriteStateAttributes()

int pcpp::io::hdf5::WriteStateAttributes	(	const StateType &	inState,
		const char	attributeLocation,
		const std::string &	filePath,
		base &	hdfFile
	)

Writes state data matching attributeLocation into HDF5 attributes at filePath.

Loops through state metadata to find data items with location of attributeLocation and writes each to an HDF5 attribute at the filePath within the given HDF5 file.

Definition at line 1411 of file PCPPHDF5.H.

References base::CreateAttribute(), metadata::dsize, base::Exists(), metadata::loc, metadata::name, and metadata::ncomp.

Referenced by plascom2::io::hdf5::OutputSingle(), TestHDF5PBSGridIO(), and TestPlasCom2Output().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ WriteStateNodeData()

int pcpp::io::hdf5::WriteStateNodeData	(	const StateType &	inState,
		const std::vector< size_t > &	gridSizes,
		const std::vector< size_t > &	partitionSizes,
		const std::vector< size_t > &	partitionStarts,
		const std::vector< size_t > &	bufferSizes,
		const std::vector< size_t > &	partitionBufferStarts,
		const std::string &	filePath,
		base &	hdfFile
	)

Definition at line 1516 of file PCPPHDF5.H.

References metadata::dsize, base::Exists(), metadata::loc, metadata::name, metadata::ncomp, numPointsBuffer, base::OpenGroup(), and base::WriteHyperSlab().

Referenced by plascom2::io::hdf5::OutputSingle(), TestHDF5PBSGridIO(), and TestPlasCom2Output().

Here is the call graph for this function:

Here is the caller graph for this function:

Classes

Functions

Function Documentation

◆ FetchGridData()

◆ FetchStateData()

◆ FileInfo() [1/2]

◆ FileInfo() [2/2]

◆ LegacyFileInfo() [1/2]

◆ LegacyFileInfo() [2/2]

◆ ParallelReadBlockStructuredGrid()

◆ PlasCom2FileInfo()

◆ ReadGrid() [1/2]

◆ ReadGrid() [2/2]

◆ ReadStateAttributes()

◆ ReadStateNodeData()

◆ WriteGrid()

◆ WriteStateAttributes()

◆ WriteStateNodeData()